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  5. Zm00001e030325_P003

Zm00001e030325_P003 (ARF6, Zm00001e030325)


Aliases : ARF6, Zm00001e030325

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030325_P003
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
AMTR_s00211p00025860 MP, IAA24, ARF5,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.02 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Adi_g014256 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014286 ARF4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057044 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061151 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088063 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g26950 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34662 ARF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32730 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33091 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33345 ARF6 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Als_g51944 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17029 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12632 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05878.t1 ARF8, ATARF8,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11714.t1 ARF6, Aspi01Gene11714 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene26336.t1 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27221.t1 ARF16, Aspi01Gene27221 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33428.t2 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45721.t2 ARF6, Aspi01Gene45721 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46203.t1 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46204.t2 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0011.g012740 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-2724 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026103 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048848 ARF6 ARF-type transcription factor & original description: CDS=56-2815 0.02 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Cba_g12691 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15068 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78264 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g05759 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23659 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g32674 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19338 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36299 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46643 HSS, ARF1-BP, ARF2, ORE14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14113 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019566001 ARF9 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01020805001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01035205001 ARF8, ATARF8 Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
Gb_02925 ARF19, IAA22, ARF11 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Gb_10929 ARF19, IAA22, ARF11 Auxin response factor 16 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Gb_18738 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Gb_23186 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Gb_23328 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_39685 ARF6 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Gb_39686 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g13520.1 ARF11, LOC_Os01g13520 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os01g48060.1 ARF3, ETT, LOC_Os01g48060 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os04g36054.1 ARF1, LOC_Os04g36054 transcription factor (ARF) 0.07 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g57610.1 ARF8, ATARF8,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.09 OrthoFinder output from all 47 species
LOC_Os05g48870.1 ARF3, ETT, LOC_Os05g48870 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
LOC_Os06g46410.1 ARF6, LOC_Os06g46410 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os11g32110.1 HSS, ARF1-BP,... transcription factor (ARF) 0.07 OrthoFinder output from all 47 species
LOC_Os12g29520.1 HSS, ARF1-BP,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Len_g29145 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_103763g0010 ARF6 Auxin response factor 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Msp_g10591 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g35318 ARF3, ETT ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06380 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08938 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19455 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31022 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002378 ARF1 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013444 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025692 ARF10 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g16405 No alias ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19673 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28812 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo117217 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Solyc01g096070.3.1 ARF9, Solyc01g096070 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc05g056040.3.1 ARF11, Solyc05g056040 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Solyc08g082630.3.1 ARF9, Solyc08g082630 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc11g069190.2.1 ARF4, Solyc11g069190 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55179 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003591_P003 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 778 867
IPR003340 B3_DNA-bd 137 238
IPR010525 ARF_dom 263 346
No external refs found!