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  5. Zm00001e030952_P002

Zm00001e030952_P002 (Zm00001e030952)


Aliases : Zm00001e030952

Description : transcription factor (BBX-CO)


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030952_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G07050 No alias CCT motif family protein 0.04 OrthoFinder output from all 47 species
AT5G57180 CIA2 chloroplast import apparatus 2 0.03 OrthoFinder output from all 47 species
Adi_g062463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08686 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17463 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31393 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34213.t1 Aspi01Gene34213 BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13442 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g08483 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003983001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
LOC_Os02g49880.1 LOC_Os02g49880 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Lfl_g17180 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37830 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g14113 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0152.g023452 No alias BBX class-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc03g119540.3.1 Solyc03g119540 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Solyc07g008540.3.1 CIA2, Solyc07g008540 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Spa_g04603 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06036 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20168 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e029234_P001 Zm00001e029234 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 22 63
IPR010402 CCT_domain 397 439
No external refs found!