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  5. Zm00001e032150_P001

Zm00001e032150_P001 (LBD41, Zm00001e032150)


Aliases : LBD41, Zm00001e032150

Description : transcription factor (AS2/LOB)


Gene families : OG0001073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032150_P001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00137p00051070 LBD39,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AMTR_s00137p00087340 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 OrthoFinder output from all 47 species
AT1G67100 LBD40 LOB domain-containing protein 40 0.05 OrthoFinder output from all 47 species
AT3G02550 LBD41 LOB domain-containing protein 41 0.08 OrthoFinder output from all 47 species
AT4G37540 LBD39 LOB domain-containing protein 39 0.02 OrthoFinder output from all 47 species
AT5G67420 LBD37, ASL39 LOB domain-containing protein 37 0.03 OrthoFinder output from all 47 species
Adi_g048099 LBD39 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108649 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10966 LBD39 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0059.g034501 LBD38 AS2/LOB-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Cba_g13473 LBD38 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G068800.1 LBD37, ASL39,... AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G070700.1 LBD38, Ceric.08G070700 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01008284001 LBD40 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01031035001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 OrthoFinder output from all 47 species
Gb_36943 LBD40 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os01g20800.1 LOC_Os01g20800 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g32770.1 LBD41, LOC_Os01g32770 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species
Lfl_g17424 LBD38 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g26418 LBD39 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_223267g0010 LBD40 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g27564 LBD37, ASL39 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28151 LBD38 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g119530.3.1 LBD41, Solyc03g119530 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Solyc04g077990.3.1 LBD38, Solyc04g077990 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e005129_P001 LBD37, ASL39,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 4 59
No external refs found!