Zm00001e032423_P002 (ARF3, ETT, Zm00001e032423)

Aliases : ARF3, ETT, Zm00001e032423

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e032423_P002
Cluster	HCCA: Cluster_110

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00155p00082980	ARF16,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Adi_g020207	ARF9	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g025684	ARF9	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107312	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g118366	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06038	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g14536	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32218	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32730	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33345	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g51944	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17029	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12632	ARF16	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g22304	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene11714.t1	ARF6, Aspi01Gene11714	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene29721.t2	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene33428.t2	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45721.t2	ARF6, Aspi01Gene45721	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene51864.t1	ARF16, Aspi01Gene51864	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0002.g001367	ARF10	ARF-type transcription factor & original description: CDS=1-2124	0.03	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Azfi_s0185.g056651	ARF6	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Cba_g12691	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g15068	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.28G004000.1	HSS, ARF1-BP,...	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.29G070000.1	ARF6, Ceric.29G070000	ARF-type transcription factor & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.30G022300.1	ARF6, Ceric.30G022300	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g03840	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g44007	ARF16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g01740	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12286	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g14113	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g18587	ARF16	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g27139	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008950001	ARF17	Auxin response factor 17 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
GSVIVT01025691001	ARF16	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
GSVIVT01035204001	ARF8, ATARF8	RNA biosynthesis.transcriptional activation.B3...	0.07	OrthoFinder output from all 47 species
GSVIVT01035205001	ARF8, ATARF8	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.07	OrthoFinder output from all 47 species
Gb_02925	ARF19, IAA22, ARF11	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Gb_23186	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Gb_23328	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Gb_39685	ARF6	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Gb_39686	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os01g48060.1	ARF3, ETT, LOC_Os01g48060	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os02g35140.1	ARF1, LOC_Os02g35140	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g56850.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g57610.1	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.07	OrthoFinder output from all 47 species
LOC_Os05g48870.1	ARF3, ETT, LOC_Os05g48870	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.08	OrthoFinder output from all 47 species
LOC_Os06g48950.1	ARF19, IAA22,...	transcription factor (ARF)	0.07	OrthoFinder output from all 47 species
LOC_Os11g32110.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Lfl_g05750	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g07104	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_103763g0010	ARF6	Auxin response factor 6 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
MA_2237g0020	ARF16	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_85955g0020	ARF19, IAA22, ARF11	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Ore_g30357	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g41869	ARF17	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g06380	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g19396	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712	ARF6	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019239	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: CDS=1-3375	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025692	ARF10	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g16405	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g51872	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc05g047460.3.1	ARF19, IAA22,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Solyc05g056040.3.1	ARF11, Solyc05g056040	transcription factor (ARF)	0.09	OrthoFinder output from all 47 species
Solyc09g007810.4.1	ARF16, Solyc09g007810	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Spa_g29254	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e023038_P001	ARF10, Zm00001e023038	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e032135_P002	ARF3, ETT, Zm00001e032135	transcription factor (ARF)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	292	372
IPR003340	B3_DNA-bd	166	267

External Links

No external refs found!

Zm00001e032423_P002 (ARF3, ETT, Zm00001e032423)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation