Aliases : DRT111, Zm00001e034397
Description : pre-mRNA splicing factor (SPF45/RBM17)
Gene families : OG0007273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007273_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e034397_P001 | |
| Cluster | HCCA: Cluster_137 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g023977 | DRT111 | pre-mRNA splicing factor *(SFPS/DRT111) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g106562 | DRT111 | pre-mRNA splicing factor *(SFPS/DRT111) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g01922 | DRT111 | pre-mRNA splicing factor *(SFPS/DRT111) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G091900.1 | DRT111, Ceric.11G091900 | pre-mRNA splicing factor *(SFPS/DRT111) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_32096 | DRT111 | pre-mRNA splicing factor (SPF45/RBM17) | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g10863 | DRT111 | pre-mRNA splicing factor *(SFPS/DRT111) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Mp2g10810.1 | DRT111 | pre-mRNA splicing factor (SPF45/RBM17) | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0059.g015143 | DRT111 | pre-mRNA splicing factor *(SFPS/DRT111) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g069790.3.1 | DRT111, Solyc02g069790 | pre-mRNA splicing factor (SPF45/RBM17) | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| CC | GO:0005681 | spliceosomal complex | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000467 | G_patch_dom | 213 | 252 |
| No external refs found! |
