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  5. Zm00001e034918_P002

Zm00001e034918_P002 (NFD2, HMG BETA 1,...)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02, Zm00001e034918

Description : HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 112.0)


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e034918_P002
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00094550 NFD03, HMGB3,... High mobility group B protein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Aop_g23124 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aop_g38218 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aop_g48668 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007563 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cba_g23108 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000663.58 ATHMG, HMG, SSRP1, NFD No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.6 NFD2, HMG BETA... No description available 0.01 OrthoFinder output from all 47 species
Cre06.g261450 ATHMG, HMG, SSRP1, NFD No description available 0.01 OrthoFinder output from all 47 species
Dac_g19456 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Dac_g20756 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g30007 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01034361001 HMGB6 High mobility group B protein 7 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Msp_g38531 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Ore_g39688 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g17368 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sam_g27294 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g31468 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sam_g36464 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sam_g40555 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Solyc04g008820.3.1 HMGB6, Solyc04g008820 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 75 144
No external refs found!