Aliases : PAB5, Zm00001e037390
Description : mRNA poly-A-tail binding factor (PABP)
Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G22760 | PAB3 | poly(A) binding protein 3 | 0.07 | OrthoFinder output from all 47 species | |
| AT5G03580 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g011275 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g02254 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene16592.t1 | PAB2, PABP2,... | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene16593.t1 | PAB2, PABP2,... | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene18547.t1 | PAB8, PABP8,... | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene47319.t1 | PAB8, PABP8,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0280.g062302 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g20798 | PAB8, PABP8 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g17281 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g45170 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01016951001 | PAB6 | Protein biosynthesis.translation initiation.mRNA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01033724001 | PAB7 | Protein biosynthesis.translation initiation.mRNA... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g04354 | PAB8, PABP8 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g54838 | PAB2, PABP2, ATPAB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g072043.1.1 | PAB5, Solyc04g072043 | mRNA poly-A-tail binding factor (PABP) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g008620.3.1 | PAB7, Solyc09g008620 | mRNA poly-A-tail binding factor (PABP) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
| MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| No external refs found! |
