Zm00001e039095_P002 (Zm00001e039095)

Aliases : Zm00001e039095

Description : DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica (sp|q0dvx2|rh50_orysj : 991.0)

Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e039095_P002
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00149950	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
AT3G06980	No alias	DEA(D/H)-box RNA helicase family protein	0.08	OrthoFinder output from all 47 species
Adi_g056846	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g15180	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene64106.t1	Aspi01Gene64106	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g10864	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.28G050700.1	Ceric.28G050700	not classified & original description: pacid=50570551...	0.07	OrthoFinder output from all 47 species
Dcu_g07014	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g22864	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01017719001	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.11	OrthoFinder output from all 47 species
LOC_Os03g01830.1	LOC_Os03g01830	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.08	OrthoFinder output from all 47 species
Len_g02379	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g37545	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp8g11020.1	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Ore_g36231	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g33516	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30132	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16562	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo142751	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Smo403724	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc11g045180.3.1	Solyc11g045180	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	502	617
IPR011545	DEAD/DEAH_box_helicase_dom	279	452

External Links

No external refs found!

Zm00001e039095_P002 (Zm00001e039095)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation