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  5. Zm00001e041823_P001

Zm00001e041823_P001 (Zm00001e041823)


Aliases : Zm00001e041823

Description : component ADA1 of SAGA transcription co-activator complex


Gene families : OG0001506 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001506_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041823_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AT4G33890 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 OrthoFinder output from all 47 species
Adi_g103257 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aev_g03322 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Als_g26308 No alias component *(ADA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029796 No alias component *(ADA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Cba_g32594 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Cba_g39163 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ceric.24G023100.1 Ceric.24G023100 component *(ADA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ceric.25G027300.1 Ceric.25G027300 component *(ADA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Ehy_g19414 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
GSVIVT01016065001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01035521001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01037861001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
LOC_Os04g56300.1 LOC_Os04g56300 component ADA1 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Len_g01832 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Lfl_g02173 No alias component *(ADA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Mp5g08050.1 No alias component ADA1 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Pir_g40490 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Pir_g61284 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ppi_g01115 No alias component *(ADA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Solyc03g117820.1.1 Solyc03g117820 component ADA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Solyc06g068610.3.1 Solyc06g068610 component ADA1 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Zm00001e003039_P001 Zm00001e003039 component ADA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Zm00001e005767_P001 Zm00001e005767 component ADA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0070461 SAGA-type complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR024738 Hfi1/Tada1 27 331
No external refs found!