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  5. Zm00001e041910_P003

Zm00001e041910_P003 (ARF8, ATARF8, Zm00001e041910)


Aliases : ARF8, ATARF8, Zm00001e041910

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041910_P003
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00168950 HSS, ARF1-BP,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00198750 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.06 OrthoFinder output from all 47 species
AMTR_s00036p00215020 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.04 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT2G46530 ARF11 auxin response factor 11 0.02 OrthoFinder output from all 47 species
AT3G61830 ARF18 auxin response factor 18 0.03 OrthoFinder output from all 47 species
AT4G23980 ARF9 auxin response factor 9 0.04 OrthoFinder output from all 47 species
AT4G30080 ARF16 auxin response factor 16 0.02 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.05 OrthoFinder output from all 47 species
Adi_g014256 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054964 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g057044 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g061151 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g075709 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080414 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088063 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103007 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g107312 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02591 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06038 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20559 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32730 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g33060 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33091 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33345 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g51944 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g06737 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21442 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22304 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70630 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05880.t1 ARF19, IAA22,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06586.t1 ARF6, Aspi01Gene06586 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11714.t1 ARF6, Aspi01Gene11714 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene29721.t2 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33428.t1 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33428.t2 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45721.t2 ARF6, Aspi01Gene45721 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46203.t1 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46204.t2 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64733.t1 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0129.g048848 ARF6 ARF-type transcription factor & original description: CDS=56-2815 0.02 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g11427 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58910 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78264 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G078200.1 ARF6, Ceric.10G078200 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.28G004000.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.29G070000.1 ARF6, Ceric.29G070000 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.35G054000.1 ARF6, Ceric.35G054000 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g05759 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05781 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22423 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32674 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08681 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09257 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14113 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008950001 ARF17 Auxin response factor 17 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01019566001 ARF9 RNA biosynthesis.transcriptional activation.B3... 0.06 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01027166001 ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.06 OrthoFinder output from all 47 species
GSVIVT01035205001 ARF8, ATARF8 Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Gb_18738 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_31132 ARF4 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_39685 ARF6 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Gb_39686 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g48060.1 ARF3, ETT, LOC_Os01g48060 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os02g06910.1 ARF6, LOC_Os02g06910 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g35140.1 ARF1, LOC_Os02g35140 transcription factor (ARF) 0.08 OrthoFinder output from all 47 species
LOC_Os02g41800.1 ARF16, LOC_Os02g41800 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g57610.1 ARF8, ATARF8,... transcription factor (ARF) 0.09 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
LOC_Os05g48870.1 ARF3, ETT, LOC_Os05g48870 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os06g46410.1 ARF6, LOC_Os06g46410 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os06g48950.1 ARF19, IAA22,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os11g32110.1 HSS, ARF1-BP,... transcription factor (ARF) 0.07 OrthoFinder output from all 47 species
LOC_Os12g29520.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os12g41950.1 ARF6, LOC_Os12g41950 transcription factor (ARF) 0.09 OrthoFinder output from all 47 species
Len_g08347 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11557 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17368 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03495 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05750 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07072 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_103763g0010 ARF6 Auxin response factor 6 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_122218g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_85955g0010 ARF19, IAA22, ARF11 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Mp1g07070.1 ARF10 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Msp_g14175 ARF6 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15236 ARF1 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31549 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13614 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04439 ARF10 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06380 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19455 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11690 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001668 ARF1 ARF-type transcription factor & original description: CDS=1-2553 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712 ARF6 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g51872 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo437944 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Smo438333 TIR5, MSG1,... Auxin response factor 11 OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species
Solyc05g047460.3.1 ARF19, IAA22,... transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Solyc05g056040.3.1 ARF11, Solyc05g056040 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc07g016180.3.1 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc09g007810.4.1 ARF16, Solyc09g007810 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Solyc11g069190.2.1 ARF4, Solyc11g069190 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Solyc12g042070.3.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55179 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27871 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e039552_P004 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 229
IPR010525 ARF_dom 254 337
IPR033389 AUX/IAA_dom 704 795
No external refs found!