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  5. Mp1g02350.1

Mp1g02350.1


Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g02350.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.07 OrthoFinder output from all 47 species
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
Adi_g085033 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13080 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32429 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12468 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05195 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07010 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12256 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75000 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.21 No alias DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Cre17.g719000 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Dcu_g43300 No alias helicase UAP56 & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11077 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g54474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c7_5890V3.1 Pp3c7_5890 DEAD/DEAH box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017678 No alias helicase UAP56 & original description: CDS=11-1291 0.02 OrthoFinder output from all 47 species
Sam_g51328 No alias helicase UAP56 & original description: none 0.01 OrthoFinder output from all 47 species
Solyc06g066060.3.1 Solyc06g066060 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Tin_g14284 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026684_P001 Zm00001e026684 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Zm00001e027715_P001 Zm00001e027715 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 278 385
IPR011545 DEAD/DEAH_box_helicase_dom 73 238
No external refs found!