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  5. Mp1g03900.1

Mp1g03900.1


Description : component Sm-D1 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g03900.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00127560 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.07 OrthoFinder output from all 47 species
AT3G07590 No alias Small nuclear ribonucleoprotein family protein 0.07 OrthoFinder output from all 47 species
AT4G02840 No alias Small nuclear ribonucleoprotein family protein 0.05 OrthoFinder output from all 47 species
Adi_g077290 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Als_g04085 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Aop_g53191 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Ceric.11G065500.1 Ceric.11G065500 component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.23 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Cre16.g665400 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Dcu_g10626 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Gb_28878 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
LOC_Os02g37430.1 LOC_Os02g37430 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
LOC_Os04g39444.1 LOC_Os04g39444 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
MA_96784g0010 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Msp_g40348 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
Nbi_g40653 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Pp3c5_16280V3.1 Pp3c5_16280 Small nuclear ribonucleoprotein family protein 0.04 OrthoFinder output from all 47 species
Zm00001e022838_P001 Zm00001e022838 component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 5 69
No external refs found!