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  5. Mp1g04040.1

Mp1g04040.1 (GRP2B, ATGRP2B, ATCSP4)


Aliases : GRP2B, ATGRP2B, ATCSP4

Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g04040.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00206510 GRP2B, ATGRP2B,... External stimuli response.temperature.Csd... 0.03 OrthoFinder output from all 47 species
Adi_g007943 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Adi_g107190 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.01 OrthoFinder output from all 47 species
Adi_g107191 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Adi_g107192 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Ceric.11G069400.1 CSDP1, Ceric.11G069400 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Ceric.22G017900.1 ATCSP2, GRP2,... cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Ceric.39G049600.1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.10 No alias Cold shock protein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Pnu_g32314 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Pp3c5_7920V3.1 GRP2B, ATGRP2B,... cold shock domain protein 1 0.03 OrthoFinder output from all 47 species
Ppi_g08100 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g06106 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g21680 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g22941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23946 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g26933 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Spa_g00238 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Tin_g19963 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 135 152
IPR001878 Znf_CCHC 170 185
IPR002059 CSP_DNA-bd 11 75
No external refs found!