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  5. Mp1g06620.1

Mp1g06620.1 (EMB2762)


Aliases : EMB2762

Description : SSU processome assembly factor (NOC4)


Gene families : OG0004927 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g06620.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00141100 EMB2762,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT2G17250 EMB2762 CCAAT-binding factor 0.06 OrthoFinder output from all 47 species
Aev_g08693 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.01 OrthoFinder output from all 47 species
Ala_g02072 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
Aop_g14342 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene55690.t2 EMB2762, Aspi01Gene55690 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0079.g038429 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.04 OrthoFinder output from all 47 species
Ceric.14G034900.1 EMB2762, Ceric.14G034900 SSU processome assembly factor *(NOC4) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.49 EMB2762 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Cre01.g068377 EMB2762 Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from all 47 species
Dcu_g03035 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g13099 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01004114001 EMB2762 No description available 0.02 OrthoFinder output from all 47 species
LOC_Os04g49580.1 EMB2762, LOC_Os04g49580 SSU processome assembly factor (NOC4) 0.09 OrthoFinder output from all 47 species
Lfl_g06636 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
MA_10433722g0010 EMB2762 SSU processome assembly factor (NOC4) 0.03 OrthoFinder output from all 47 species
MA_9224196g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g27976 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Sam_g49646 No alias SSU processome assembly factor *(NOC4) & original... 0.05 OrthoFinder output from all 47 species
Solyc10g074560.2.1 EMB2762, Solyc10g074560 SSU processome assembly factor (NOC4) 0.12 OrthoFinder output from all 47 species
Tin_g19274 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e041386_P001 EMB2762, Zm00001e041386 SSU processome assembly factor (NOC4) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 339 514
No external refs found!