Aliases : ATSS4, SS4, SSIV
Description : starch synthase (SSIV)
Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp1g14910.1 | |
| Cluster | HCCA: Cluster_50 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00214840 | ATSS4, SS4,... | Probable starch synthase 4, chloroplastic/amyloplastic... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00037p00164200 | ATSS3, SS3,... | Carbohydrate metabolism.starch... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g05532 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g25563 | ATSS4, SS4, SSIV | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g05131 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g04493 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g02255 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g05284 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0003.g007652 | ATSS3, SS3 | starch synthase *(SS3) & original description: CDS=201-2645 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g33306 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G125000.1 | ATSS4, SS4,... | starch synthase *(SS4) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.18G020900.1 | ATSS3, SS3,... | starch synthase *(SS3) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cre13.g579598 | ATSS3, SS3 | Carbohydrate metabolism.starch... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g10971 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g45424 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g11357 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g14950 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04240 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g25353 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g02313 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g15347 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0224.g026292 | ATSS4, SS4, SSIV | not classified & original description: CDS=1-2052 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g51042 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g51044 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Smo92017 | ATSS4, SS4, SSIV | Carbohydrate metabolism.starch... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g10367 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g17570 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g26044 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e027473_P001 | ATSS4, SS4,... | starch synthase (SSIV) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| MF | GO:0030247 | polysaccharide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| MF | GO:2001070 | starch binding | IEP | HCCA |
| No external refs found! |
