Aliases : emb1354, CDC48C
Description : Calmodulin-interacting protein 111 OS=Arabidopsis thaliana (sp|q9let7|ci111_arath : 393.0)
Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00040p00198390 | CIP111,... | Calmodulin-interacting protein 111 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00072p00117380 | evm_27.TU.AmTr_v1... | Cell division control protein 48 homolog D... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00085p00052820 | CDC48A, CDC48,... | Cell division cycle protein 48 homolog OS=Glycine max | 0.02 | OrthoFinder output from all 47 species | |
| AT3G09840 | CDC48A, CDC48, ATCDC48 | cell division cycle 48 | 0.03 | OrthoFinder output from all 47 species | |
| AT3G56690 | CIP111 | Cam interacting protein 111 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g080379 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g114666 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aev_g20068 | CIP111 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ala_g07270 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g09138 | CIP111 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g33031 | No alias | platform ATPase CDC48 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g19975 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g02580 | CDC48B | platform ATPase CDC48 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g05302 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g15787 | CDC48B | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.16G061700.1 | emb1354, CDC48C,... | platform ATPase CDC48 & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000525.10 | emb1354, CDC48C | Cell division control protein 48 homolog C... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021463.10 | No alias | Cell division control protein 48 homolog D... | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g398550 | emb1354, CDC48C | Cell division control protein 48 homolog C... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g09762 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g04096 | CIP111 | platform ATPase CDC48 & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g08248 | No alias | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g10601 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g09095 | CDC48B | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01007689001 | No alias | Cell division cycle protein 48 homolog OS=Glycine max | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01010343001 | emb1354, CDC48C | Cell division control protein 48 homolog C... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01025783001 | CIP111 | Calmodulin-interacting protein 111 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g01980.1 | emb1354, CDC48C,... | Cell division control protein 48 homolog C... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g32887 | No alias | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g39791 | No alias | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_893724g0010 | CDC48B | Cell division control protein 48 homolog B... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g06020 | No alias | platform ATPase CDC48 & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g44449 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g19173 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g40907 | CDC48B | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g52066 | CDC48B | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g13016 | CIP111 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g53020 | emb1354, CDC48C | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g12429 | No alias | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g13901 | No alias | platform ATPase CDC48 & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g068330.4.1 | emb1354, CDC48C,... | Cell division control protein 48 homolog C... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g074980.3.1 | Solyc06g074980 | platform ATPase (CDC48) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g069720.2.1 | Solyc11g069720 | platform ATPase (CDC48) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g04738 | emb1354, CDC48C | platform ATPase CDC48 & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g12521 | CIP111 | platform ATPase CDC48 & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g41958 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g19659 | CIP111 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e021405_P001 | CIP111, Zm00001e021405 | Calmodulin-interacting protein 111 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e036688_P001 | emb1354, CDC48C,... | Cell division control protein 48 homolog C... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041158_P001 | CDC48B, Zm00001e041158 | Cell division control protein 48 homolog B... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| CC | GO:0005681 | spliceosomal complex | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |
