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  5. Mp3g04110.1

Mp3g04110.1 (VPS11, ATVPS11)


Aliases : VPS11, ATVPS11

Description : component VPS11 of HOPS/CORVET membrane tethering complexes


Gene families : OG0006628 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006628_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g04110.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00115250 VPS11, ATVPS11,... Vesicle trafficking.target membrane... 0.02 OrthoFinder output from all 47 species
AT2G05170 VPS11, ATVPS11 vacuolar protein sorting 11 0.04 OrthoFinder output from all 47 species
Cba_g04073 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.02 OrthoFinder output from all 47 species
Ceric.13G089700.1 VPS11, ATVPS11,... component *(VPS11) of HOPS/CORVET membrane tethering... 0.04 OrthoFinder output from all 47 species
Cre02.g095074 VPS11, ATVPS11 Vesicle trafficking.target membrane... 0.02 OrthoFinder output from all 47 species
Dcu_g06475 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.05 OrthoFinder output from all 47 species
GSVIVT01030049001 VPS11, ATVPS11 Vesicle trafficking.target membrane... 0.07 OrthoFinder output from all 47 species
Gb_07923 VPS11, ATVPS11 component VPS11 of HOPS/CORVET membrane tethering complexes 0.14 OrthoFinder output from all 47 species
Lfl_g11239 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.07 OrthoFinder output from all 47 species
MA_20596g0020 VPS11, ATVPS11 component VPS11 of HOPS/CORVET membrane tethering complexes 0.04 OrthoFinder output from all 47 species
Nbi_g04965 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.01 OrthoFinder output from all 47 species
Ore_g30507 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0171.g024391 VPS11, ATVPS11 component *(VPS11) of HOPS/CORVET membrane tethering... 0.02 OrthoFinder output from all 47 species
Solyc06g065170.4.1 VPS11, ATVPS11,... component VPS11 of HOPS/CORVET membrane tethering complexes 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR024763 VPS11_C 934 976
IPR000547 Clathrin_H-chain/VPS_repeat 400 517
No external refs found!