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  5. Mp3g08570.1

Mp3g08570.1


Description : no hits & (original description: none)


Gene families : OG0000563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g08570.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AT5G66010 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g014575 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g014576 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g00721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02856 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g26397 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.19G006800.1 Ceric.19G006800 not classified & original description: pacid=50575954... 0.03 OrthoFinder output from all 47 species
Ceric.21G068400.1 Ceric.21G068400 not classified & original description: pacid=50603032... 0.03 OrthoFinder output from all 47 species
Cre07.g352650 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g02177 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g41681 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g22296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g06242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10520g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g01620 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g16283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g038816.1.1 Solyc02g038816 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g25573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02758 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e026627_P001 Zm00001e026627 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 291 357
IPR000504 RRM_dom 142 207
IPR000504 RRM_dom 24 91
No external refs found!