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  5. Mp3g08890.1

Mp3g08890.1


Description : component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex


Gene families : OG0002089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g08890.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT5G55670 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
Adi_g060583 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Aev_g14101 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Aob_g17567 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene16717.t1 Aspi01Gene16717 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
Ceric.10G054500.1 Ceric.10G054500 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Ceric.18G063400.1 Ceric.18G063400 component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.04 OrthoFinder output from all 47 species
Dcu_g05780 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Dde_g03963 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
GSVIVT01000588001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.03 OrthoFinder output from all 47 species
GSVIVT01014675001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.07 OrthoFinder output from all 47 species
Gb_22175 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.03 OrthoFinder output from all 47 species
LOC_Os08g38240.1 LOC_Os08g38240 component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.03 OrthoFinder output from all 47 species
Len_g15072 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.02 OrthoFinder output from all 47 species
MA_202067g0010 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.05 OrthoFinder output from all 47 species
MA_20828g0010 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.06 OrthoFinder output from all 47 species
MA_20828g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Pnu_g18790 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002196 No alias component *(CPFS6/CFIm68) of Cleavage Factor I (CF-Im)... 0.03 OrthoFinder output from all 47 species
Solyc07g065510.4.1 Solyc07g065510 component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043189 H4/H2A histone acetyltransferase complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902562 H4 histone acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 357 426
No external refs found!