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  5. Mp3g20500.1

Mp3g20500.1 (CDC48B)


Aliases : CDC48B

Description : Cell division control protein 48 homolog B OS=Arabidopsis thaliana (sp|q9zpr1|cd48b_arath : 612.0)


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g20500.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00198390 CIP111,... Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00095p00091200 CIP111,... Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G03670 CDC48B cell division cycle 48B 0.02 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.02 OrthoFinder output from all 47 species
AT3G56690 CIP111 Cam interacting protein 111 0.03 OrthoFinder output from all 47 species
Adi_g000420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04868 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20068 CIP111 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g07270 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14974 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63726 CIP111 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02580 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0115.g046252 emb1354, CDC48C platform ATPase CDC48 & original description: CDS=1-2478 0.04 OrthoFinder output from all 47 species
Cba_g15787 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g77518 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G061700.1 emb1354, CDC48C,... platform ATPase CDC48 & original description:... 0.02 OrthoFinder output from all 47 species
Cre09.g398550 emb1354, CDC48C Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
Dac_g09762 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04096 CIP111 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08248 No alias platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g02340 No alias platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.02 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
LOC_Os11g11340.1 CIP111, LOC_Os11g11340 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10427366g0010 CDC48B Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Msp_g20925 CIP111 platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g31553 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44449 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g52066 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17721 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12429 No alias platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g13901 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25222 No alias platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Solyc05g012190.3.1 CDC48B, Solyc05g012190 Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Solyc10g078320.2.1 CIP111, Solyc10g078320 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g11219 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19659 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021405_P001 CIP111, Zm00001e021405 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e041158_P001 CDC48B, Zm00001e041158 Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP HCCA
BP GO:0009245 lipid A biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046493 lipid A metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901269 lipooligosaccharide metabolic process IEP HCCA
BP GO:1901271 lipooligosaccharide biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 219 257
IPR041569 AAA_lid_3 491 535
IPR003959 ATPase_AAA_core 331 468
IPR003959 ATPase_AAA_core 59 194
No external refs found!