1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp4g02780.1

Mp4g02780.1


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana (sp|f4jrj6|deah9_arath : 830.0)


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g02780.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00124770 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
AT1G26370 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT2G47250 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.02 OrthoFinder output from all 47 species
AT3G62310 No alias RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Adi_g014958 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g045408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g084485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g14188 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01897 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23007 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Aob_g11608 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g64809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69620 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09275.t1 Aspi01Gene09275 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0033.g025048 No alias not classified & original description: CDS=1403-2254 0.02 OrthoFinder output from all 47 species
Cba_g04257 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g11619 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g71566 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G078700.1 Ceric.04G078700 not classified & original description: pacid=50630845... 0.04 OrthoFinder output from all 47 species
Ceric.15G036900.1 Ceric.15G036900 RNA helicase *(Prp22) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.25G032700.1 Ceric.25G032700 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Ceric.34G065000.1 Ceric.34G065000 not classified & original description: pacid=50623415... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000796.23 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021589.28 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cre07.g329150 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from all 47 species
Dac_g16924 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g13249 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22478 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010362001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01021163001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os01g11370.1 LOC_Os01g11370 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os06g09280.1 LOC_Os06g09280 RNA helicase (Prp22) 0.04 OrthoFinder output from all 47 species
LOC_Os11g20554.1 LOC_Os11g20554 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Len_g08915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57131 EMB3011 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08910 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29092 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g34333 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434449g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 OrthoFinder output from all 47 species
MA_277016g0010 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07572 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g10611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g43956 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g17219 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Ore_g30533 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07808 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Pir_g15013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18506 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17507 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14114 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03727 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g06275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14599 No alias RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16290 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16823 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Sam_g48742 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Solyc03g115390.4.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Solyc05g015040.4.1 Solyc05g015040 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Solyc09g008120.4.1 Solyc09g008120 RNA helicase (Prp22) 0.02 OrthoFinder output from all 47 species
Solyc09g097820.3.1 Solyc09g097820 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Spa_g07103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01282 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02893 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12928 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001487_P003 Zm00001e001487 helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species
Zm00001e014112_P001 Zm00001e014112 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e036358_P005 Zm00001e036358 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 458 531
IPR011709 DEAD-box_helicase_OB_fold 606 682
IPR001650 Helicase_C 269 395
No external refs found!