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  5. Mp4g09890.1

Mp4g09890.1


Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer


Gene families : OG0000735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g09890.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ala_g19484 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Aspi01Gene02941.t1 RBCS1A, Aspi01Gene02941 small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Cba_g37481 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Cba_g39071 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.09G051100.1 RBCS1A, Ceric.09G051100 small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.09G051300.1 RBCS1A, Ceric.09G051300 small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.09G051400.1 RBCS1A, Ceric.09G051400 small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.09G051500.1 RBCS1A, Ceric.09G051500 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ceric.25G070600.1 RBCS1A, Ceric.25G070600 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Dcu_g33446 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Dcu_g51202 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Dde_g46369 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ehy_g04204 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Len_g48939 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Lfl_g09992 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Mp4g06010.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Pp3c19_1840V3.1 RBCS1A, Pp3c19_1840 Ribulose bisphosphate carboxylase (small chain) family protein 0.02 OrthoFinder output from all 47 species
Pp3c3_14510V3.1 RBCS1A, Pp3c3_14510 ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from all 47 species
Pp3c3_20140V3.1 RBCS1A, Pp3c3_20140 ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from all 47 species
Pp3c4_13260V3.1 RBCS1A, Pp3c4_13260 Ribulose bisphosphate carboxylase (small chain) family protein 0.02 OrthoFinder output from all 47 species
Ppi_g01698 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ppi_g32726 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ppi_g60704 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Smo147927 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Tin_g36825 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 71 179
No external refs found!