Mp4g12130.1 (SSR16)

Aliases : SSR16

Description : component mtRPS16 of small ribosomal subunit proteome

Gene families : OG0002911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002911_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g12130.1
Cluster	HCCA: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
Adi_g002716	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Adi_g019302	SSR16	component *(bS16m) of small mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Adi_g074405	SSR16	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Als_g16922	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0066.g036077	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Ceric.13G025200.1	Ceric.13G025200	component *(bS16m) of small mitoribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cre12.g494450	No alias	30S ribosomal protein S16, chloroplastic OS=Staurastrum...	0.26	OrthoFinder output from all 47 species
Dcu_g50939	SSR16	component *(bS16m) of small mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ehy_g05272	SSR16	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Len_g04546	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Nbi_g00253	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Pnu_g28852	SSR16	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g04188	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ppi_g19261	No alias	component *(bS16c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008294	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Sam_g10314	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sam_g10315	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Smo7638	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Spa_g17692	No alias	component *(bS16m) of small mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000307	Ribosomal_S16	97	157

External Links

No external refs found!

Mp4g12130.1 (SSR16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation