Aliases : CLPP6, NCLPP1, NCLPP6
Description : proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex
Gene families : OG0006579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006579_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp4g17530.1 | |
| Cluster | HCCA: Cluster_50 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G11750 | CLPP6, NCLPP1, NCLPP6 | CLP protease proteolytic subunit 6 | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g021569 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g031237 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g13136 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g14482 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g02386 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.1Z076900.1 | CLPP6, NCLPP1,... | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Cre06.g299650 | NCLPP1, CLPP5, NCLPP5 | ATP-dependent Clp protease proteolytic subunit 6,... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g07347 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g10453 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g00383 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01031936001 | CLPP6, NCLPP1, NCLPP6 | Protein degradation.peptidase families.serine-type... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_39858 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component ClpP1/3-6 of chloroplast... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os03g29810.1 | CLPP6, NCLPP1,... | proteolytic core component ClpP1/3-6 of chloroplast... | 0.1 | OrthoFinder output from all 47 species | |
| Len_g09909 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g02713 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g15241 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g07340 | No alias | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g40789 | No alias | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g051310.2.1 | CLPP6, NCLPP1,... | proteolytic core component ClpP1/3-6 of chloroplast... | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g00289 | CLPP6, NCLPP1, NCLPP6 | proteolytic core component *(ClpP1/3-6) of chloroplast... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e016157_P003 | CLPP6, NCLPP1,... | proteolytic core component ClpP1/3-6 of chloroplast... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004852 | uroporphyrinogen-III synthase activity | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006643 | membrane lipid metabolic process | IEP | HCCA |
| BP | GO:0006664 | glycolipid metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| BP | GO:0009247 | glycolipid biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
| MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046467 | membrane lipid biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1903509 | liposaccharide metabolic process | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023562 | ClpP/TepA | 123 | 296 |
| No external refs found! |
