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  5. Mp5g00910.1

Mp5g00910.1


Description : Probable F-box protein At4g22030 OS=Arabidopsis thaliana (sp|o65451|fb333_arath : 148.0)


Gene families : OG0001367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001367_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g00910.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00037390 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00128270 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00128640 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00044p00129060 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00055p00185500 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00085p00174790 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT4G04480 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.02 OrthoFinder output from all 47 species
Aev_g16127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42734 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g39319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20983.t1 Aspi01Gene20983 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34498.t1 Aspi01Gene34498 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34558.t1 Aspi01Gene34558 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34562.t1 Aspi01Gene34562 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34564.t1 Aspi01Gene34564 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0182.g056424 No alias not classified & original description: CDS=1-1896 0.02 OrthoFinder output from all 47 species
Azfi_s0334.g065497 No alias not classified & original description: CDS=1-1488 0.03 OrthoFinder output from all 47 species
Cba_g13201 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G060100.1 Ceric.17G060100 not classified & original description: pacid=50617754... 0.02 OrthoFinder output from all 47 species
Ceric.1Z099600.1 Ceric.1Z099600 not classified & original description: pacid=50573463... 0.04 OrthoFinder output from all 47 species
Ceric.1Z099700.1 Ceric.1Z099700 not classified & original description: pacid=50573460... 0.03 OrthoFinder output from all 47 species
Ceric.1Z099800.1 Ceric.1Z099800 not classified & original description: pacid=50573466... 0.04 OrthoFinder output from all 47 species
Ceric.1Z159800.1 Ceric.1Z159800 not classified & original description: pacid=50567680... 0.03 OrthoFinder output from all 47 species
Ceric.1Z159900.1 Ceric.1Z159900 not classified & original description: pacid=50567683... 0.03 OrthoFinder output from all 47 species
Ceric.1Z166900.1 Ceric.1Z166900 not classified & original description: pacid=50632887... 0.03 OrthoFinder output from all 47 species
Ceric.1Z228600.1 Ceric.1Z228600 not classified & original description: pacid=50606299... 0.03 OrthoFinder output from all 47 species
Ceric.1Z240500.1 Ceric.1Z240500 not classified & original description: pacid=50576892... 0.03 OrthoFinder output from all 47 species
Ceric.33G013700.1 Ceric.33G013700 not classified & original description: pacid=50607125... 0.02 OrthoFinder output from all 47 species
Dac_g26357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20132 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g30200 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g17786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17787 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17788 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g13260.1 LOC_Os02g13260 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp5g17910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g12175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0213.g025971 No alias not classified & original description: CDS=1-1506 0.02 OrthoFinder output from all 47 species
Solyc02g080840.1.1 Solyc02g080840 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc02g080850.1.1 Solyc02g080850 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e014444_P001 Zm00001e014444 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e014445_P001 Zm00001e014445 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e024925_P001 Zm00001e024925 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027949 Chloroplast_duf 155 455
No external refs found!