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  5. Mp5g09490.1

Mp5g09490.1 (ATVPS54, VPS54)


Aliases : ATVPS54, VPS54

Description : GARP-specific component VPS54 of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes


Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g09490.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00168660 ATVPS54, VPS54,... Vesicle trafficking.target membrane tethering.GARP/EARP... 0.07 OrthoFinder output from all 47 species
AT4G19490 ATVPS54, VPS54 VPS54 0.02 OrthoFinder output from all 47 species
Adi_g063596 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ala_g02680 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Als_g05127 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Aob_g22183 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Aspi01Gene49548.t1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ceric.15G033300.1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.25 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre02.g087551 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.04 OrthoFinder output from all 47 species
Dac_g12476 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g12433 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
GSVIVT01037972001 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.04 OrthoFinder output from all 47 species
Gb_03763 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.03 OrthoFinder output from all 47 species
LOC_Os04g13470.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Len_g01396 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Lfl_g02410 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Msp_g23962 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Nbi_g16046 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ore_g15136 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Pir_g01065 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Ppi_g03262 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021959 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Sam_g10508 No alias GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Solyc02g030100.4.1 ATVPS54, VPS54,... Vacuolar protein sorting-associated protein 54,... 0.02 OrthoFinder output from all 47 species
Solyc02g030110.2.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Zm00001e008702_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Zm00001e040599_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR012501 Vps54_C 880 1011
No external refs found!