Description : basal transcription factor (TFIa/RRN3)
Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g05450 | No alias | basal transcription factor *(TFIa/RRN3) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g07110 | No alias | basal transcription factor *(TFIa/RRN3) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene29471.t1 | Aspi01Gene29471 | basal transcription factor *(TFIa/RRN3) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010018 | No alias | basal transcription factor *(TFIa/RRN3) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.13G084500.1 | Ceric.13G084500 | basal transcription factor *(TFIa/RRN3) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Cre03.g207950 | No alias | RNA biosynthesis.RNA polymerase I-dependent... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g11606 | No alias | basal transcription factor *(TFIa/RRN3) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g17890 | No alias | basal transcription factor *(TFIa/RRN3) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27581 | No alias | basal transcription factor *(TFIa/RRN3) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g082340.3.1 | Solyc02g082340 | basal transcription factor (TFIa/RRN3) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013105_P001 | Zm00001e013105 | basal transcription factor (TFIa/RRN3) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | HCCA |
| CC | GO:0000178 | exosome (RNase complex) | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0007062 | sister chromatid cohesion | IEP | HCCA |
| BP | GO:0007064 | mitotic sister chromatid cohesion | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| CC | GO:0018995 | host cellular component | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0022402 | cell cycle process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| CC | GO:0033643 | host cell part | IEP | HCCA |
| CC | GO:0033646 | host intracellular part | IEP | HCCA |
| CC | GO:0033647 | host intracellular organelle | IEP | HCCA |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| CC | GO:0042025 | host cell nucleus | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:1903047 | mitotic cell cycle process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| CC | GO:1905354 | exoribonuclease complex | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007991 | RNA_pol_I_trans_ini_fac_RRN3 | 33 | 596 |
| No external refs found! |
