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  5. Mp8g11020.1

Mp8g11020.1


Description : DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana (sp|q8gug7|rh50_arath : 441.0)


Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g11020.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
AT3G06980 No alias DEA(D/H)-box RNA helicase family protein 0.05 OrthoFinder output from all 47 species
Adi_g056846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G050700.1 Ceric.28G050700 not classified & original description: pacid=50570551... 0.12 OrthoFinder output from all 47 species
Cre10.g436650 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dac_g32150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07014 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g17941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017719001 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os03g01830.1 LOC_Os03g01830 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
Len_g02379 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g37545 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g13305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005945 No alias not classified & original description: CDS=228-2279 0.04 OrthoFinder output from all 47 species
Sam_g16562 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc11g045180.3.1 Solyc11g045180 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Spa_g15666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039095_P002 Zm00001e039095 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 836 951
IPR011545 DEAD/DEAH_box_helicase_dom 613 787
No external refs found!