Pp3c11_17080V3.1 (RNA_POL_II_LSRNA_POL_I...)

Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, Pp3c11_17080

Description : RNA polymerase II large subunit

Gene families : OG0013869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013869_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c11_17080V3.1
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene57815.t1	CRK8, Aspi01Gene57815	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c10_11520V3.1	NRPC1, Pp3c10_11520	nuclear RNA polymerase A1	0.02	OrthoFinder output from all 47 species
Pp3c2_30110V3.1	Pp3c2_30110	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c3_29710V3.1	NRPC1, Pp3c3_29710	RNA polymerase II large subunit	0.02	OrthoFinder output from all 47 species
Pp3c3_35870V3.1	CRK8, Pp3c3_35870	nuclear RNA polymerase C1	0.02	OrthoFinder output from all 47 species
Pp3c3_37790V3.1	Pp3c3_37790	nuclear RNA polymerase C1	0.02	OrthoFinder output from all 47 species
Pp3c9_12661V3.1	RNA_POL_II_LSRNA_...	nuclear RNA polymerase A1	0.03	OrthoFinder output from all 47 species
Pp3c9_12713V3.1	NRPC1, Pp3c9_12713	nuclear RNA polymerase A1	0.02	OrthoFinder output from all 47 species
Pp3c9_17770V3.1	NRPC1, Pp3c9_17770	nuclear RNA polymerase C1	0.04	OrthoFinder output from all 47 species
Pp3c9_17780V3.1	NRPC1, Pp3c9_17780	nuclear RNA polymerase C1	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	20	113

External Links

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Pp3c11_17080V3.1 (RNA_POL_II_LSRNA_POL_I...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation