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  5. Pp3c11_5240V3.1

Pp3c11_5240V3.1 (ATVTI13, VTI13, Pp3c11_5240)


Aliases : ATVTI13, VTI13, Pp3c11_5240

Description : Vesicle transport v-SNARE family protein


Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_5240V3.1
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Ala_g00976 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Als_g45407 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Aop_g25830 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Azfi_s0002.g001214 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Azfi_s0069.g036538 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Ceric.11G005300.1 ATVTI13, VTI13,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Cre13.g577500 VTI12, VTI1B, ATVTI12 Vesicle trafficking.SNARE target membrane recognition... 0.01 OrthoFinder output from all 47 species
Dac_g04060 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Dcu_g40879 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
LOC_Os01g37980.1 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.02 OrthoFinder output from all 47 species
Len_g35595 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Mp1g12970.1 SGR4, ZIG1,... VTI group Qb-type SNARE protein 0.02 OrthoFinder output from all 47 species
Sam_g29467 No alias Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Smo146421 SGR4, ZIG1,... Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Spa_g48510 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Zm00001e027750_P001 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR007705 Vesicle_trsprt_v-SNARE_N 12 90
No external refs found!