Pp3c12_10870V3.1 (Pp3c12_10870)

Aliases : Pp3c12_10870

Description : Ribosomal protein S24e family protein

Gene families : OG0000886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c12_10870V3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00221450	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT3G04920	No alias	Ribosomal protein S24e family protein	0.04	OrthoFinder output from all 47 species
AT5G28060	No alias	Ribosomal protein S24e family protein	0.03	OrthoFinder output from all 47 species
Aop_g12028	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g12029	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Azfi_s0007.g011184	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Azfi_s0103.g044621	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.04G017300.1	Ceric.04G017300	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000361.64	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Cre10.g456200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Ehy_g20443	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
GSVIVT01021860001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Gb_38272	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os01g52490.1	LOC_Os01g52490	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os02g13530.1	LOC_Os02g13530	component RPS24 of SSU proteome	0.01	OrthoFinder output from all 47 species
LOC_Os06g36160.1	LOC_Os06g36160	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Len_g49108	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g00880	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Lfl_g31874	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_119841g0010	No alias	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp1g10680.1	No alias	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Ore_g32358	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g12348	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g12714	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Smo227903	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Smo271584	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Solyc01g097870.3.1	Solyc01g097870	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Solyc06g084230.3.1	Solyc06g084230	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Tin_g29759	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Zm00001e014422_P002	Zm00001e014422	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e019937_P001	Zm00001e019937	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e028203_P001	Zm00001e028203	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0120009	intermembrane lipid transfer	IEP	HCCA
MF	GO:0120013	lipid transfer activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	26	103

External Links

No external refs found!

Pp3c12_10870V3.1 (Pp3c12_10870)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation