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  5. Pp3c12_1830V3.1

Pp3c12_1830V3.1 (ATRZ-1A, Pp3c12_1830)


Aliases : ATRZ-1A, Pp3c12_1830

Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_1830V3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g056501 GR-RBP3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g056502 GR-RBP3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g056634 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g00392 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15329.t1 Aspi01Gene15329 RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51438.t1 GRP2, ATGRP2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030451 No alias not classified & original description: CDS=165-734 0.01 OrthoFinder output from all 47 species
Cba_g01674 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38953 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cre17.g729150 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g03970 GR-RBP5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g10484 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g04562 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g29739 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g33631 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43693 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26696 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g06392 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07967 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g30660 GR-RBP3 RNA ediTing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 118 133
IPR000504 RRM_dom 10 78
No external refs found!