Pp3c14_4000V3.1 (Pp3c14_4000)

Aliases : Pp3c14_4000

Description : RNA polymerase II large subunit

Gene families : OG0011134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011134_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c14_4000V3.1
Cluster	HCCA: Cluster_148

Target	Alias	Description	ECC score	Gene Family Method
Pp3c14_231V3.1	Pp3c14_231	nuclear RNA polymerase D1A	0.03	OrthoFinder output from all 47 species
Pp3c19_15140V3.1	Pp3c19_15140	RNA polymerase II large subunit	0.02	OrthoFinder output from all 47 species
Pp3c1_270V3.1	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.03	OrthoFinder output from all 47 species
Pp3c22_9940V3.1	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.02	OrthoFinder output from all 47 species
Pp3c24_10300V3.1	Pp3c24_10300	RNA polymerase II large subunit	0.04	OrthoFinder output from all 47 species
Pp3c4_24940V3.1	Pp3c4_24940	RNA polymerase II large subunit	0.02	OrthoFinder output from all 47 species
Pp3c5_1410V3.1	Pp3c5_1410	RNA polymerase II large subunit	0.04	OrthoFinder output from all 47 species
Pp3c8_4620V3.1	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.06	OrthoFinder output from all 47 species
Pp3s67_110V3.1	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	1	56

External Links

No external refs found!

Pp3c14_4000V3.1 (Pp3c14_4000)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation