1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c15_17530V3.1

Pp3c15_17530V3.1 (Pp3c15_17530)


Aliases : Pp3c15_17530

Description : Translation protein SH3-like family protein


Gene families : OG0006569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006569_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c15_17530V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AT5G54600 No alias Translation protein SH3-like family protein 0.06 OrthoFinder output from all 47 species
Adi_g019582 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Als_g04734 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g00183 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010426 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cba_g02325 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.33G048800.1 Ceric.33G048800 component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cre16.g652550 No alias Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Dcu_g00516 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Dde_g05722 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01014572001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_13209 No alias 50S ribosomal protein L24, chloroplastic OS=Spinacia... 0.04 OrthoFinder output from all 47 species
LOC_Os06g46930.1 LOC_Os06g46930 component psRPL24 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g05147 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g05272 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Mp3g07850.1 No alias component psRPL24 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Msp_g18519 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Nbi_g00588 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ore_g05626 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g07148 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016787 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g08486 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g08487 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Smo230291 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Solyc07g063960.3.1 Solyc07g063960 component psRPL24 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Spa_g00224 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Tin_g02402 No alias component *(uL24c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e013043_P001 Zm00001e013043 component psRPL24 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR005824 KOW 66 96
IPR003256 Ribosomal_L24 98 162
No external refs found!