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  5. Pp3c16_6660V3.1

Pp3c16_6660V3.1 (Pp3c16_6660)


Aliases : Pp3c16_6660

Description : Pectin lyase-like superfamily protein


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_6660V3.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
AT1G69940 ATPPME1, PPME1 Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g105814 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g20723 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26785 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11134.t1 Aspi01Gene11134 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16818.t1 Aspi01Gene16818 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene31942.t1 Aspi01Gene31942 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene59345.t1 Aspi01Gene59345 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34624 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.24G024700.1 Ceric.24G024700 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.29G054600.1 Ceric.29G054600 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.37G019200.1 Ceric.37G019200 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G019300.1 Ceric.37G019300 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g16361 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g03343 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g19236 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01009729001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
GSVIVT01014641001 QRT1 Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
Gb_23209 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os04g46740.1 LOC_Os04g46740 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Len_g16179 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g40175 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_19196g0010 ATPE11, PE11 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Msp_g44845 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g32792 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g40521 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g43683 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g08747 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c12_12490V3.1 Pp3c12_12490 Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Solyc02g075620.4.1 Solyc02g075620 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Solyc07g043240.4.1 Solyc07g043240 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Spa_g00755 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.01 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 88 178
IPR000070 Pectinesterase_cat 201 382
No external refs found!