1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c1_24950V3.1

Pp3c1_24950V3.1 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1, Pp3c1_24950

Description : dicer-like 1


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_24950V3.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g19022 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.01 OrthoFinder output from all 47 species
Nbi_g06606 ATDCL3, DCL3 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 628 717
IPR001650 Helicase_C 501 553
No external refs found!