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  5. Pp3c1_24960V3.1

Pp3c1_24960V3.1 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1, Pp3c1_24960

Description : dicer-like 1


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_24960V3.1

Target Alias Description ECC score Gene Family Method Actions
Als_g22807 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.01 OrthoFinder output from all 47 species
Aob_g19967 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
LOC_Os09g14610.1 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Sam_g11612 No alias endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 347 389
IPR005034 Dicer_dimerisation_dom 464 530
IPR000999 RNase_III_dom 833 975
No external refs found!