1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c1_5010V3.1

Pp3c1_5010V3.1 (Pp3c1_5010)


Aliases : Pp3c1_5010

Description : Integrase-type DNA-binding superfamily protein


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_5010V3.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00102110 RAP2.11,... External stimuli response.biotic... 0.01 OrthoFinder output from all 47 species
AT1G01250 No alias Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G57600 No alias Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g116599 No alias subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ala_g13570 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g20736 ATERF-9, ERF9, ATERF9 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g37025 DEAR3 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.01 OrthoFinder output from all 47 species
Als_g45656 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g03996 HRD subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aob_g23166 No alias cutin and suberin biosynthesis transcription factor... 0.01 OrthoFinder output from all 47 species
Aop_g18696 ERF110 subgroup ERF-X transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21431 No alias subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aop_g58325 RRTF1 subgroup ERF-X transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene03221.t1 DEAR3, Aspi01Gene03221 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.01 OrthoFinder output from all 47 species
Cba_g61055 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01002195001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
GSVIVT01008649001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01015540001 WIN1, SHN1 Cell wall.cutin and suberin.biosynthesis... 0.01 OrthoFinder output from all 47 species
GSVIVT01035852001 SHN3 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
GSVIVT01036228001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
Gb_03783 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Gb_07474 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Gb_23321 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Gb_23870 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Gb_34848 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Gb_37188 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Gb_41433 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Gb_41836 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Len_g09253 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
Len_g31258 DREB26 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_426919g0030 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_45733g0020 ORA47 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_5306433g0010 No alias Ethylene-responsive transcription factor ERF017... 0.01 OrthoFinder output from all 47 species
MA_66969g0010 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_88g0020 ORA47 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_98464g0010 RAP2.4 Ethylene-responsive transcription factor RAP2-4... 0.01 OrthoFinder output from all 47 species
Pnu_g31928 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
Ppi_g11128 HRE2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15405 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011575 DEAR1, CEJ1, ATERF#011 not classified & original description: CDS=1-717 0.01 OrthoFinder output from all 47 species
Smo68470 ERF-1, ATERF-1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
Solyc06g066540.1.1 TINY2, Solyc06g066540 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Spa_g35497 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Tin_g14637 No alias subgroup ERF-V transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e032434_P001 ERF-1, ATERF-1,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 75 123
No external refs found!