Aliases : CIB5, Pp3c20_590
Description : cryptochrome-interacting basic-helix-loop-helix 5
Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c20_590V3.1 | |
| Cluster | HCCA: Cluster_81 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00267570 | UNE12,... | RNA biosynthesis.transcriptional activation.bHLH... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00022p00231410 | evm_27.TU.AmTr_v1... | External stimuli response.light.UV-A/blue... | 0.01 | OrthoFinder output from all 47 species | |
| AT1G66470 | RHD6 | ROOT HAIR DEFECTIVE6 | 0.01 | OrthoFinder output from all 47 species | |
| AT3G62090 | PIL2, PIF6 | phytochrome interacting factor 3-like 2 | 0.01 | OrthoFinder output from all 47 species | |
| AT5G37800 | ATRSL1, RSL1 | RHD SIX-LIKE 1 | 0.01 | OrthoFinder output from all 47 species | |
| AT5G50915 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g021895 | CIB1 | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g045238 | No alias | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g085081 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g22777 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g31589 | RSL4 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g32490 | RSL2 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g08826 | PIL5, PIF1 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aspi01Gene03952.t1 | Aspi01Gene03952 | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene08246.t1 | Aspi01Gene08246 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aspi01Gene46202.t1 | Aspi01Gene46202 | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene54623.t1 | LRL3, Aspi01Gene54623 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0054.g033854 | No alias | bHLH-type transcription factor & original description: CDS=1-1758 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0083.g038807 | HEC1 | bHLH-type transcription factor & original description: CDS=1-1287 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0319.g064443 | RSL2 | bHLH-type transcription factor & original description:... | 0.01 | OrthoFinder output from all 47 species | |
| Cba_g15803 | No alias | regulatory protein (CIB) of blue light perception &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g16021 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g27104 | HEC2 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.31G051300.1 | LRL3, Ceric.31G051300 | bHLH-type transcription factor & original description:... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g07111 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g16940 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g05640 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g09172 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g25890 | RHD6 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g26546 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g05791 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Ehy_g12150 | UNE10 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g18802 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Ehy_g29687 | PIL5, PIF1 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g31834 | SPT | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01000717001 | UNE12 | RNA biosynthesis.transcriptional activation.bHLH... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01011873001 | No alias | External stimuli response.light.UV-A/blue... | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01021032001 | No alias | External stimuli response.light.UV-A/blue... | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01028516001 | PIL5, PIF1 | External stimuli response.light.red/far red light.PIF... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os02g47660.1 | CIB1, LOC_Os02g47660 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os03g10770.1 | RSL2, LOC_Os03g10770 | transcription factor (bHLH) | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os05g04740.2 | PIF3, POC1,... | transcription factor (bHLH) | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os06g08500.1 | LRL3, LOC_Os06g08500 | transcription factor (bHLH) | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os07g05010.2 | PIL5, PIF1,... | transcription factor (bHLH). PIF red/far-red light... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os09g32510.1 | LOC_Os09g32510 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os11g25560.1 | LOC_Os11g25560 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g03281 | LRL3 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Len_g10068 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Lfl_g37660 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| MA_138148g0010 | RHD6 | transcription factor (bHLH) | 0.01 | OrthoFinder output from all 47 species | |
| MA_50630g0010 | LRL3 | transcription factor (bHLH) | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g15071 | SPT | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g30793 | No alias | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g03697 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g25662 | CIB1 | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g43163 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Pir_g38111 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c16_21590V3.1 | HEC2, Pp3c16_21590 | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g02227 | LRL3 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g28847 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g39212 | RHD6 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g56046 | GT140, IND1, IND, EDA33 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g62088 | CIB1 | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0033.g011126 | SPT | bHLH-type transcription factor & original description: CDS=1-1488 | 0.01 | OrthoFinder output from all 47 species | |
| Solyc02g091440.2.1 | RHD6, Solyc02g091440 | transcription factor (bHLH) | 0.01 | OrthoFinder output from all 47 species | |
| Solyc04g005220.3.1 | Solyc04g005220 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc12g098620.2.1 | Solyc12g098620 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g03670 | RSL2 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g09944 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g10023 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g24532 | LRL3 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g40384 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g51777 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g51778 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g51940 | LRL3 | bHLH-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g57420 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g10179 | No alias | regulatory protein (CIB) of blue light perception &... | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g11732 | HEC1 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g21077 | BPEp, ZCW32, BPE, BPEub | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g21602 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e025656_P001 | RHD6, Zm00001e025656 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e035422_P001 | RSL4, Zm00001e035422 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e036318_P001 | LRL1, Zm00001e036318 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e038765_P001 | Zm00001e038765 | transcription factor (bHLH) | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e040380_P002 | PIF3, POC1,... | transcription factor (bHLH). PIF red/far-red light... | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000145 | exocyst | IEP | HCCA |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006887 | exocytosis | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| BP | GO:0016197 | endosomal transport | IEP | HCCA |
| BP | GO:0016482 | cytosolic transport | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0032940 | secretion by cell | IEP | HCCA |
| BP | GO:0042147 | retrograde transport, endosome to Golgi | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0046903 | secretion | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
| BP | GO:0140352 | export from cell | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
