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  5. Pp3c21_14880V3.1

Pp3c21_14880V3.1 (AtLa1, La1, Pp3c21_14880)


Aliases : AtLa1, La1, Pp3c21_14880

Description : La protein 1


Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c21_14880V3.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00056900 AtLa1, La1,... La protein 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AT4G32720 AtLa1, La1 La protein 1 0.01 OrthoFinder output from all 47 species
Azfi_s0008.g011277 AtLa1, La1 nascent RNA chaperone *(LA) & original description: CDS=135-1643 0.02 OrthoFinder output from all 47 species
Dac_g09267 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01035666001 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os04g42010.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.01 OrthoFinder output from all 47 species
MA_78251g0010 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g04820.1 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.02 OrthoFinder output from all 47 species
Nbi_g01017 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10340 No alias nascent RNA chaperone *(LA) & original description: none 0.01 OrthoFinder output from all 47 species
Solyc08g068310.3.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006630 La_HTH 15 83
IPR000504 RRM_dom 125 178
IPR014886 La_xRRM 277 368
No external refs found!