Pp3c22_18130V3.1 (Pp3c22_18130)

Aliases : Pp3c22_18130

Description : Gag-Pol-related retrotransposon family protein

Gene families : OG0000220 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000220_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c22_18130V3.1
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene16686.t2	Aspi01Gene16686	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene16687.t1	Aspi01Gene16687	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene16688.t2	Aspi01Gene16688	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene18118.t1	Aspi01Gene18118	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene18126.t1	Aspi01Gene18126	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene18126.t3	Aspi01Gene18126	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene18129.t3	Aspi01Gene18129	heavy chain of Dynein microtubule-based motor protein...	0.01	OrthoFinder output from all 47 species
Aspi01Gene27863.t1	Aspi01Gene27863	heavy chain of Dynein microtubule-based motor protein...	0.01	OrthoFinder output from all 47 species
Aspi01Gene27870.t1	Aspi01Gene27870	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene46598.t1	Aspi01Gene46598	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene61605.t2	Aspi01Gene61605	heavy chain of Dynein microtubule-based motor protein...	0.02	OrthoFinder output from all 47 species
Aspi01Gene61605.t3	Aspi01Gene61605	heavy chain of Dynein microtubule-based motor protein...	0.01	OrthoFinder output from all 47 species
Aspi01Gene61616.t1	Aspi01Gene61616	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene69853.t1	Aspi01Gene69853	heavy chain of Dynein microtubule-based motor protein...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.1	No alias	Dynein gamma chain, flagellar outer arm OS=Chlamydomonas...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020943.88	No alias	Cytoskeleton.microtubular network.Dynein...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021590.1	No alias	Cytoplasmic dynein 2 heavy chain 1 OS=Chlamydomonas reinhardtii	0.01	OrthoFinder output from all 47 species
Dcu_g38892	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Gb_13540	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Gb_13874	No alias	Dynein-1-alpha heavy chain, flagellar inner arm I1...	0.01	OrthoFinder output from all 47 species
Sam_g02358	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Smo185288	No alias	Cytoskeleton.microtubular network.Dynein...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003774	cytoskeletal motor activity	None	Extended
MF	GO:0003777	microtubule motor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005875	microtubule associated complex	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007018	microtubule-based movement	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0030286	dynein complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	354	425
IPR035706	AAA_9	574	661
IPR004273	Dynein_heavy_D6_P-loop	914	1044
IPR001878	Znf_CCHC	227	242

External Links

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Pp3c22_18130V3.1 (Pp3c22_18130)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation