Aliases : Pp3c23_11170
Description : Ribosomal protein L1p/L10e family
Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c23_11170V3.1 | |
| Cluster | HCCA: Cluster_28 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G63490 | No alias | Ribosomal protein L1p/L10e family | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g083284 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.01 | OrthoFinder output from all 47 species | |
| Ala_g13358 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g11179 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035757 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.36G042400.1 | Ceric.36G042400 | component *(uL1c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Cre02.g088900 | No alias | Protein biosynthesis.organelle translation... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g00779 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g06155 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g12366 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01032196001 | No alias | Protein biosynthesis.organelle translation... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g32220.1 | LOC_Os05g32220 | component psRPL1 of large ribosomal subunit proteome | 0.01 | OrthoFinder output from all 47 species | |
| Lfl_g03897 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g19309 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.01 | OrthoFinder output from all 47 species | |
| MA_10002614g0010 | No alias | 50S ribosomal protein L1, chloroplastic OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g07500.1 | No alias | component psRPL1 of large ribosomal subunit proteome | 0.08 | OrthoFinder output from all 47 species | |
| Nbi_g11958 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g28354 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g41124 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0154.g023589 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g13571 | No alias | component *(uL1m) of large mitoribosomal-subunit... | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g18339 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Smo143134 | No alias | Protein biosynthesis.organelle translation... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g16769 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g00638 | No alias | component *(uL1c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e031570_P001 | Zm00001e031570 | component psRPL1 of large ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003747 | translation release factor activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006415 | translational termination | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008079 | translation termination factor activity | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0022411 | cellular component disassembly | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR028364 | Ribosomal_L1/biogenesis | 146 | 336 |
| No external refs found! |
