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  5. Pp3c24_8970V3.1

Pp3c24_8970V3.1 (Pp3c24_8970)


Aliases : Pp3c24_8970

Description : DNA-directed RNA polymerase family protein


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_8970V3.1

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene14110.t1 NRPD2B, Aspi01Gene14110 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene30461.t2 DRD2, NRPE2,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g03843 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.01 OrthoFinder output from all 47 species
Pp3c15_19410V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.06 OrthoFinder output from all 47 species
Pp3c16_10710V3.1 Pp3c16_10710 DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from all 47 species
Pp3c16_6070V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from all 47 species
Pp3c17_12270V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.03 OrthoFinder output from all 47 species
Pp3c21_8540V3.1 NRPC2, Pp3c21_8540 nuclear RNA polymerase C2 0.04 OrthoFinder output from all 47 species
Pp3c25_15140V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.03 OrthoFinder output from all 47 species
Pp3c3_35890V3.1 Pp3c3_35890 DNA-directed RNA polymerase family protein 0.03 OrthoFinder output from all 47 species
Pp3c3_37780V3.1 Pp3c3_37780 DNA-directed RNA polymerase family protein 0.04 OrthoFinder output from all 47 species
Pp3c4_24950V3.1 Pp3c4_24950 nuclear RNA polymerase C2 0.05 OrthoFinder output from all 47 species
Pp3c5_18580V3.1 EMB1989, RPB2,... nuclear RNA polymerase A2 0.03 OrthoFinder output from all 47 species
Pp3c9_12670V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.05 OrthoFinder output from all 47 species
Pp3c9_17790V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from all 47 species
Pp3s67_170V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 83 146
No external refs found!