Pp3c2_28870V3.1 (Pp3c2_28870)

Aliases : Pp3c2_28870

Description : Ribosomal protein S30 family protein

Gene families : OG0002477 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002477_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c2_28870V3.1
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00064720	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Adi_g108274	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Aop_g34461	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Azfi_s0068.g036442	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g65418	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g73257	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Ceric.05G056700.1	Ceric.05G056700	component *(eS30) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001003.33	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
Cre16.g666301	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Dcu_g28589	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01016902001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	OrthoFinder output from all 47 species
LOC_Os02g56014.1	LOC_Os02g56014	component RPS30 of SSU proteome	0.01	OrthoFinder output from all 47 species
LOC_Os06g07580.1	LOC_Os06g07580	component RPS30 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp2g24290.1	No alias	component RPS30 of SSU proteome	0.04	OrthoFinder output from all 47 species
Mp8g09080.1	No alias	component RPS30 of SSU proteome	0.03	OrthoFinder output from all 47 species
Sam_g31576	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Sam_g35687	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Sam_g36137	No alias	component *(eS30) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Solyc08g076340.3.1	Solyc08g076340	component RPS30 of SSU proteome	0.02	OrthoFinder output from all 47 species
Solyc12g008700.3.1	Solyc12g008700	component RPS30 of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006846	Ribosomal_S30	25	81

External Links

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Pp3c2_28870V3.1 (Pp3c2_28870)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation