1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c3_10260V3.1

Pp3c3_10260V3.1 (Pp3c3_10260)


Aliases : Pp3c3_10260

Description : Zinc-binding ribosomal protein family protein


Gene families : OG0001983 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001983_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_10260V3.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00106300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
AMTR_s00077p00123980 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AT3G23390 No alias Zinc-binding ribosomal protein family protein 0.06 OrthoFinder output from all 47 species
AT4G14320 No alias Zinc-binding ribosomal protein family protein 0.16 OrthoFinder output from all 47 species
Adi_g074466 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g11187 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Als_g02098 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Als_g60012 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g17011 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aop_g33471 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0111.g045692 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0390.g067675 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.07G068200.1 Ceric.07G068200 component *(eL42) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.14G031000.1 Ceric.14G031000 component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.16G012300.1 Ceric.16G012300 component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G042400.1 Ceric.29G042400 component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000489.11 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Cre06.g310700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Dac_g25357 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dac_g46318 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Dcu_g17062 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g42200 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g51127 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01012052001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
GSVIVT01032097001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Gb_13148 No alias component RPL36a of LSU proteome component 0.16 OrthoFinder output from all 47 species
Gb_34419 No alias component RPL36a of LSU proteome component 0.15 OrthoFinder output from all 47 species
LOC_Os07g26740.1 LOC_Os07g26740 component RPL36a of LSU proteome component 0.07 OrthoFinder output from all 47 species
LOC_Os07g33898.1 LOC_Os07g33898 component RPL36a of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os07g33997.1 LOC_Os07g33997 component RPL36a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Len_g26688 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g25065 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
MA_10427098g0010 No alias component RPL36a of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_99845g0010 No alias component RPL36a of LSU proteome component 0.12 OrthoFinder output from all 47 species
Mp2g25770.1 No alias component RPL36a of LSU proteome component 0.14 OrthoFinder output from all 47 species
Msp_g06398 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Nbi_g09392 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ore_g00450 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g60179 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c7_20120V3.1 Pp3c7_20120 Zinc-binding ribosomal protein family protein 0.04 OrthoFinder output from all 47 species
Ppi_g27814 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g28165 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g55666 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007497 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009958 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g08867 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Sam_g23302 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Smo161986 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Solyc03g112850.3.1 Solyc03g112850 component RPL36a of LSU proteome component 0.09 OrthoFinder output from all 47 species
Spa_g55229 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Tin_g29053 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g37650 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Tin_g42814 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Zm00001e010489_P002 Zm00001e010489 component RPL36a of LSU proteome component 0.14 OrthoFinder output from all 47 species
Zm00001e033410_P001 Zm00001e033410 component RPL36a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Zm00001e035123_P001 Zm00001e035123 component RPL36a of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000552 Ribosomal_L44e 89 163
No external refs found!