Pp3c4_24950V3.1 (Pp3c4_24950)

Aliases : Pp3c4_24950

Description : nuclear RNA polymerase C2

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c4_24950V3.1
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
Adi_g006907	EMB1989, RPB2, NRPB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g098465	EMB1989, RPB2, NRPB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g02637	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.01	OrthoFinder output from all 47 species
Aspi01Gene14110.t1	NRPD2B, Aspi01Gene14110	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01346	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Pp3c15_19410V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.06	OrthoFinder output from all 47 species
Pp3c16_10710V3.1	Pp3c16_10710	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from all 47 species
Pp3c17_12270V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.01	OrthoFinder output from all 47 species
Pp3c21_8540V3.1	NRPC2, Pp3c21_8540	nuclear RNA polymerase C2	0.05	OrthoFinder output from all 47 species
Pp3c24_8970V3.1	Pp3c24_8970	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from all 47 species
Pp3c3_35890V3.1	Pp3c3_35890	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from all 47 species
Pp3c3_37780V3.1	Pp3c3_37780	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from all 47 species
Pp3c5_1420V3.1	Pp3c5_1420	nuclear RNA polymerase C2	0.04	OrthoFinder output from all 47 species
Pp3c7_1680V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species
Pp3c9_12710V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from all 47 species
Pp3s67_170V3.1	EMB1989, RPB2,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007120	DNA-dir_RNAP_su2_dom	1	53
IPR007641	RNA_pol_Rpb2_7	57	136

External Links

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Pp3c4_24950V3.1 (Pp3c4_24950)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation