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  5. Pp3c4_9600V3.1

Pp3c4_9600V3.1 (LBD20, Pp3c4_9600)


Aliases : LBD20, Pp3c4_9600

Description : LOB domain-containing protein 20


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_9600V3.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00241970 LBD27, SCP,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.01 OrthoFinder output from all 47 species
AMTR_s00184p00044240 LBD4,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
AT1G06280 LBD2 LOB domain-containing protein 2 0.02 OrthoFinder output from all 47 species
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.02 OrthoFinder output from all 47 species
AT2G45420 LBD18 LOB domain-containing protein 18 0.01 OrthoFinder output from all 47 species
AT3G03760 LBD20 LOB domain-containing protein 20 0.01 OrthoFinder output from all 47 species
AT3G11090 LBD21 LOB domain-containing protein 21 0.02 OrthoFinder output from all 47 species
Adi_g116107 LBD20 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g38467 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04915 AS2 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene29452.t1 LBD4, Aspi01Gene29452 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52657.t1 LBD15, ASL11,... AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0225.g058902 LBD4 AS2/LOB-type transcription factor & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0305.g063899 LBD15, ASL11 AS2/LOB-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g02965 LBD4 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g45920 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g45794 LOB AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g43172 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016332001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01025128001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01028294001 LBD29, ASL16 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.01 OrthoFinder output from all 47 species
Gb_16914 LBD1 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Gb_19390 LBD4 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Gb_22180 LBD11 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
LOC_Os01g56530.1 LBD20, LOC_Os01g56530 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
MA_10430986g0020 LBD15, ASL11 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
MA_10434193g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_127139g0010 LBD4 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
MA_13024g0010 LBD11 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
MA_16646g0010 LBD27, SCP transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
MA_61242g0010 LBD25 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Pir_g18089 LOB AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g37465 LBD11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g56591 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Solyc02g069440.3.1 LBD4, Solyc02g069440 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Solyc06g071660.3.1 LOB, Solyc06g071660 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc12g010810.1.1 LBD2, Solyc12g010810 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e000391_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Zm00001e019686_P001 LBD20, Zm00001e019686 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Zm00001e030195_P001 LBD2, Zm00001e030195 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e042347_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Zm00001e042443_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Zm00001e042448_P001 LBD29, ASL16,... transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 191 289
No external refs found!