Pp3c6_27040V3.1 (Pp3c6_27040)

Aliases : Pp3c6_27040

Description : Nucleic acid-binding, OB-fold-like protein

Gene families : OG0006085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006085_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c6_27040V3.1
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0028.g023939	No alias	component *(eS28) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0280.g062329	No alias	component *(eS28) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.01G107900.1	Ceric.01G107900	component *(eS28) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cre12.g510450	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Dcu_g44812	RPS28	component *(eS28) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01033420001	RPS28	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
LOC_Os10g27174.1	LOC_Os10g27174	component RPS28 of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_10206328g0010	RPS28	component RPS28 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_550900g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.06	OrthoFinder output from all 47 species
Pp3c1_28770V3.1	Pp3c1_28770	Nucleic acid-binding, OB-fold-like protein	0.04	OrthoFinder output from all 47 species
Ppi_g07644	RPS28	component *(eS28) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo170205	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Solyc02g021400.2.1	RPS28, Solyc02g021400	component RPS28 of SSU proteome	0.01	OrthoFinder output from all 47 species
Solyc10g078630.2.1	RPS28, Solyc10g078630	component RPS28 of SSU proteome	0.01	OrthoFinder output from all 47 species
Zm00001e000507_P001	Zm00001e000507	component RPS28 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	5	50

External Links

No external refs found!

Pp3c6_27040V3.1 (Pp3c6_27040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation