1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c6_8790V3.1

Pp3c6_8790V3.1 (Pp3c6_8790)


Aliases : Pp3c6_8790

Description : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein


Gene families : OG0000231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_8790V3.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00174320 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00036p00191120 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AT1G10880 No alias Core-2/I-branching... 0.01 OrthoFinder output from all 47 species
AT4G25870 No alias Core-2/I-branching... 0.02 OrthoFinder output from all 47 species
AT4G32290 No alias Core-2/I-branching... 0.02 OrthoFinder output from all 47 species
AT5G25330 No alias Core-2/I-branching... 0.01 OrthoFinder output from all 47 species
Aspi01Gene70121.t1 Aspi01Gene70121 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g40873 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.18G049600.1 Ceric.18G049600 not classified & original description: pacid=50621726... 0.02 OrthoFinder output from all 47 species
Dcu_g03772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g65490.1 LOC_Os01g65490 no description available(sp|q65xs5|bc10_orysj : 178.0) 0.01 OrthoFinder output from all 47 species
LOC_Os02g22160.1 LOC_Os02g22160 no description available(sp|q65xs5|bc10_orysj : 129.0) 0.03 OrthoFinder output from all 47 species
LOC_Os05g07790.1 LOC_Os05g07790 no description available(sp|q65xs5|bc10_orysj : 646.0) 0.01 OrthoFinder output from all 47 species
LOC_Os06g45110.1 LOC_Os06g45110 no description available(sp|q65xs5|bc10_orysj : 184.0) 0.02 OrthoFinder output from all 47 species
LOC_Os07g06490.1 LOC_Os07g06490 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os10g08280.1 LOC_Os10g08280 no description available(sp|q65xs5|bc10_orysj : 134.0) 0.02 OrthoFinder output from all 47 species
LOC_Os12g43880.1 LOC_Os12g43880 no description available(sp|q65xs5|bc10_orysj : 149.0) 0.02 OrthoFinder output from all 47 species
MA_10426448g0010 No alias no description available(sp|q65xs5|bc10_orysj : 176.0) 0.01 OrthoFinder output from all 47 species
MA_66615g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp8g12770.1 No alias no description available(sp|q65xs5|bc10_orysj : 176.0) 0.02 OrthoFinder output from all 47 species
Msp_g44730 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g09483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e017004_P001 Zm00001e017004 no description available(sp|q65xs5|bc10_orysj : 133.0) 0.03 OrthoFinder output from all 47 species
Zm00001e017966_P001 Zm00001e017966 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e024826_P001 Zm00001e024826 no description available(sp|q65xs5|bc10_orysj : 127.0) 0.02 OrthoFinder output from all 47 species
Zm00001e025751_P001 Zm00001e025751 no description available(sp|q65xs5|bc10_orysj : 124.0) 0.01 OrthoFinder output from all 47 species
Zm00001e042023_P001 Zm00001e042023 no description available(sp|q65xs5|bc10_orysj : 163.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003406 Glyco_trans_14 109 335
No external refs found!