Pp3c7_20120V3.1 (Pp3c7_20120)

Aliases : Pp3c7_20120

Description : Zinc-binding ribosomal protein family protein

Gene families : OG0001983 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001983_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c7_20120V3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00106300	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AMTR_s00077p00123980	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT4G14320	No alias	Zinc-binding ribosomal protein family protein	0.03	OrthoFinder output from all 47 species
Adi_g123881	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g17011	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.07G068200.1	Ceric.07G068200	component *(eL42) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Ceric.14G031000.1	Ceric.14G031000	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.29G042400.1	Ceric.29G042400	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000489.11	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre06.g310700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dac_g46318	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g42200	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
GSVIVT01012052001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01032097001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
LOC_Os07g26740.1	LOC_Os07g26740	component RPL36a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g26688	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_99845g0010	No alias	component RPL36a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp2g25770.1	No alias	component RPL36a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Msp_g06398	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ore_g00450	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g60179	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c26_11220V3.1	Pp3c26_11220	Zinc-binding ribosomal protein family protein	0.02	OrthoFinder output from all 47 species
Pp3c3_10260V3.1	Pp3c3_10260	Zinc-binding ribosomal protein family protein	0.04	OrthoFinder output from all 47 species
Ppi_g55666	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23302	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Smo161986	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Solyc03g112850.3.1	Solyc03g112850	component RPL36a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Spa_g55229	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Tin_g29053	No alias	component *(eL42) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e010489_P002	Zm00001e010489	component RPL36a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e033410_P001	Zm00001e033410	component RPL36a of LSU proteome component	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000552	Ribosomal_L44e	19	93

External Links

No external refs found!

Pp3c7_20120V3.1 (Pp3c7_20120)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation